PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28859
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 358aa    MW: 38151.6 Da    PI: 6.608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28859genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51111381128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lppGfrFhPtdeel+ +yL+++++++++++  +i++vdiyk++PwdLp+++  ++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++  g+ v
  EMT28859  11 LPPGFRFHPTDEELILHYLRNRAAATPCPV-PIIADVDIYKFDPWDLPSQAVYGDCEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHAAaPGHGV 110
               79****************************.88***************76667789*************************************9877888* PP

       NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
               g+kk Lvfykgr pkg+kt W+mheyrl
  EMT28859 111 GVKKALVFYKGRPPKGTKTAWIMHEYRL 138
               **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-638178IPR003441NAC domain
PROSITE profilePS5100559.71111178IPR003441NAC domain
PfamPF023656.8E-2712138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAQGQGAATS LPPGFRFHPT DEELILHYLR NRAAATPCPV PIIADVDIYK FDPWDLPSQA  60
VYGDCEWYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKP IHAAAPGHGV GVKKALVFYK  120
GRPPKGTKTA WIMHEYRLAA DPLAAALVAA IDSSSSVAFD KDRHGALDDW VLCRIYKKTG  180
LASPMVPPLS DYDHMADHDD LSGGGSTFDD AACSFYAHSS SSSSACGTMI TQQQPHAGRL  240
PTIPSFSELF DDYSLAQILD AEAEHGATHH LAVHPSLNQL LPVGDSAHGV QPSYYAPSSS  300
SPDGSGGSAG KRKAASPEES SAKRLNGSCF DAPPQSATGW QAAASVLGGL SHQMLPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-67718011170Stress-induced transcription factor NAC1
3swp_D3e-671017819168NAC domain-containing protein 19
3swp_C3e-671017819168NAC domain-containing protein 19
3swp_B3e-671017819168NAC domain-containing protein 19
3swp_A3e-671017819168NAC domain-containing protein 19
3swm_D3e-671017819168NAC domain-containing protein 19
3swm_C3e-671017819168NAC domain-containing protein 19
3swm_B3e-671017819168NAC domain-containing protein 19
3swm_A3e-671017819168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7834500.0KT783450.1 Triticum aestivum NAC transcription factor 29 (NAC29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559782.11e-141PREDICTED: NAC domain-containing protein 18-like
SwissprotA2YMR08e-79NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLM8C3N60.0M8C3N6_AEGTA; NAC domain-containing protein 29
STRINGBRADI1G17480.11e-140(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-77NAC-like, activated by AP3/PI